Integrated analysis of miRNA and transcription factor gene expression profiles associated with anti-tuberculosis treatment responses.

Integrated analysis of miRNA and transcription factor gene expression profiles associated with anti-tuberculosis treatment responses.

Publication date: Jun 03, 2026

Tuberculosis (TB) is a severe respiratory illness that can lead to opportunistic infections in individuals with weakened immune systems. Accurate diagnosis and monitoring of treatment responses are essential. In this study, we analyzed the miRNA and mRNA profiles of 12 patients with active TB (ATB) before and after treatment. We identified differentially expressed (DE) microRNAs (miRNAs) and messenger RNAs (mRNAs), and investigated the relationship between the expression of miRNAs and their target mRNAs. We validated the selected miRNA levels using quantitative reverse transcription polymerase chain reaction (qRT-PCR). After six months of treatment, miRNA profiling of patients with ATB revealed nine miRNAs with altered expression levels. Anti-TB treatment restored miR-223-3p, miR-6787-3p, miR-338-5p, miR-1273h-3p, miR-1288-3p, miR-200c-3p, miR-3074-3p, miR-433-3p, and miR-200b-3p levels to those observed in healthy controls. We conducted qRT-PCR to verify the top nine DE miRNAs using an additional set of 22 blood samples. The results showed that all nine DE miRNAs exhibited decreased expression after the completion of therapy. mRNA sequencing was performed on the same blood samples. This analysis confirmed the significant DE of 75 mRNAs, of which 13 (AFF3, NT5C1B, HIC2, SPATA25, ZFYVE9, HTR7, LRRC8E, METTL2A, PLD4, RGS5, EME2, TIGD5, and PEG10) interacted with the miRNAs pre-analyzed using the miRWalk miRNA target prediction and analysis program. The DE miRNAs identified in this study may serve as potential biomarkers for monitoring the therapeutic efficacy of ATB. Not applicable.

Open Access PDF

Concepts Keywords
Biomarkers Anti-TB therapy
Target Biomarkers
Therapy MicroRNAs
Tuberculosis Monitoring
Tuberculosis

Semantics

Type Source Name
disease MESH tuberculosis
pathway KEGG Tuberculosis
disease MESH opportunistic infections
disease MESH Infectious Diseases
disease MESH Dis
disease MESH Park
pathway REACTOME Reproduction
disease MESH included
disease MESH Park12
disease MESH Park4
disease MESH Park5
disease MESH Immunological Disease
drug DRUGBANK Coenzyme M
disease MESH COVID 19
disease MESH recurrence
disease MESH reinfection
disease MESH infections
disease MESH AIDS
disease MESH chronic illnesses
disease MESH granulomas
drug DRUGBANK Gold
drug DRUGBANK Isoniazid
drug DRUGBANK Rifampicin
drug DRUGBANK Ethambutol
drug DRUGBANK Pyrazinamide
drug DRUGBANK Aspartame
disease MESH Rad
disease MESH IBM
drug DRUGBANK BCG vaccine
disease MESH scars
pathway REACTOME Fanconi Anemia Pathway
disease MESH hyperplasia
pathway REACTOME Acetylation
pathway KEGG Purine metabolism
pathway KEGG Calcium signaling pathway
disease MESH pathological processes
drug DRUGBANK Cyclic Adenosine Monophosphate
pathway REACTOME Metabolism
drug DRUGBANK Nicotinamide
pathway REACTOME Fatty acid metabolism
disease MESH lung diseases
drug DRUGBANK Saquinavir
disease MESH pulmonary tuberculosis
drug DRUGBANK (S)-Des-Me-Ampa
disease MESH Malnutrition
disease MESH Allergy
drug DRUGBANK Guanosine
disease MESH Bie
disease MESH bacterial infection
pathway KEGG Phagosome
disease MESH Chai
drug DRUGBANK Niacin
disease MESH Arteriosclerosis
disease MESH thrombosis
disease MESH lung inflammation
disease MESH sepsis
disease MESH CCM
disease MESH atherosclerosis
disease MESH Lam
disease MESH HCA2
disease MESH PKC
pathway REACTOME Apoptosis
disease MESH autoimmune diseases
disease MESH malignant neoplasms
drug DRUGBANK Proline

Original Article

Leave a Comment

Your email address will not be published. Required fields are marked *